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Sergey Nurk

Hello, dear guest.

My name is Sergey Nurk and I live in Saint-Petersburg, Russia.

In 2011 I graduated with honors from SPbSU Department of Software Engineering

Currently I am a PhD student in Saint-Petersburg Academic University.

 

As you probably noticed, I work at Pavel Pevzner's Algorithmic Biology Lab on the development of SPAdes genome assembler and several projects in the field of comparative genomics.

My interests include:

  • algorithms design
  • computational genomics
  • bioinformatics
  • data analysis
  • software design

 

Publications

 

  • Andrey D. Prjibelski, Irina Vasilinetc, Anton Bankevich, Alexey Gurevich, Tatiana Krivosheeva, Sergey Nurk, Son Pham, Anton Korobeynikov, Alla Lapidus and Pavel A. Pevzner: “ExSPAnder: a universal repeat resolver for DNA fragment assembly”Bioinformatics, 30(12), i293-i301
  • Sergey Nurk, Anton Bankevich, Dmitry Antipov, Alexey Gurevich, Anton Korobeynikov, Alla Lapidus, Andrey Prjibelsky, Alexey Pyshkin, Alexander Sirotkin, Yakov Sirotkin, Ramunas Stepanauskas, Jeffrey McLean, Roger Lasken, Scott R. Clingenpeel, Tanja Woyke, Glenn Tesler, Max A. Alekseyev, and Pavel A. Pevzner: "Assembling Single-Cell Genomes and Mini-Metagenomes From Chimeric MDA Products". Journal of Computational Biology 20(10), 2013
  • Sergey Nurk, Anton Bankevich, Dmitry Antipov, Alexey Gurevich, Anton Korobeynikov, Alla Lapidus, Andrey Prjibelsky, Alexey Pyshkin, Alexander Sirotkin, Yakov Sirotkin, Ramunas Stepanauskas, Jeffrey McLean, Roger Lasken, Scott R. Clingenpeel, Tanja Woyke, Glenn Tesler, Max A. Alekseyev, and Pavel A. Pevzner: "Assembling Genomes and Mini-metagenomes from Highly Chimeric Reads". Proceedings of the 17th Annual International Conference on Research in Computational Molecular Biology (RECOMB 2013), Lecture Notes in Computer Science 7821 (2013).
  • McLean JS, Lombardo MJ, Ziegler M, Novotny M, Yee-Greenbaum J, Badger JH, Tesler G, Nurk S, Lesin V, Brami D, Hall AP, Edlund A, Allen LZ, Durkin S, Reed S, Torriani F, Pevzner PA, Friedman R, Venter JC, Lasken RS: "Genome of the pathogen Porphyromonas gingivalis recovered from a biofilm in a hospital sink using a high-throughput single cell genomic platform"Genome Research 2013, 23:867-877
  • Anton Bankevich, Sergey Nurk, Dmitry Antipov, Alexey A. Gurevich, Mikhail Dvorkin, Alexander S. Kulikov, Valery M. Lesin, Sergey I. Nikolenko, Son Pham, Andrey D. Prjibelski, Alexey V. Pyshkin, Alexander V. Sirotkin, Nikolay Vyahhi, Glenn Tesler, Max A. Alekseyev, and Pavel A. Pevzner: "SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing". Journal of Computational Biology 19(5) (2012)

 

Here is my detailed cv. If you decide to contact me, don't hesitate to write sergeynurk at gmail.com