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QUAST: Quality Assessment Tool for Genome Assemblies

 

QUAST evaluates genome assemblies. For metagenome assembly evaluation, see MetaQUAST project. For contig alignment visualization, see Icarus project.

QUAST works both with and without a reference genome.
The tool accepts multiple assemblies, thus is suitable for comparison.

 

Source code

Manual

QUAST web interface

Paper at Bioinformatics journal

Paper at PubMed

Poster at RECOMB-2013 (PDF)

Citation:

Alexey Gurevich, Vladislav Saveliev, Nikolay Vyahhi and Glenn Tesler,
QUAST: quality assessment tool for genome assemblies,
Bioinformatics (2013) 29 (8): 1072-1075.
doi: 10.1093/bioinformatics/btt086
First published online: February 19, 2013 

Citation of other formats

 

About us:

Latest news:

  • April 19, 2016  the version 4.0 is released! Now with Icarus visualizer! Check out full list of changes.
  • April 1, 2016 — MetaQUAST paper was published in Bioinformatics volume 32, issue 7, pp. 1088-1090.
  • November 27, 2015 — the version 3.2 is released! Now with raw reads support. Check out full list of changes.
  • July 13, 2015 — QUAST repositories are open for public access on Github! Command-line tool is here, web interface is here.
  • June, 2015 — the number of QUAST downloads exceeded ten thousands (including more than 6500 downloads of QUAST v.2.3)!
  • April 15, 2013 — The paper was published in Bioinformatics volume 29, issue 8, pp. 1072-1075.

Please help us to make QUAST better by sending your comments, bug reports, and suggestions to quast.support@bioinf.spbau.ru.

 

Samples of QUAST plots:

            

Interactive QUAST evaluation demos of single-cell E. coliH. sapiens chr. 14 , and B. impatiens (bumblebee) assemblies.