University of California, San Diego
National Institute of Health (NIH), USA: Human Microbiome Project (HMP)
J. Craig Venter Institite (JCVI)
Joint Genome Institute (JGI): Genomic Encyclopedia for Bacteria and Archaea (GEBA) and other projects
Scripps Institution of Oceanography
Department of Ecology and Evolutionary Biology, Yale University
Broad Institute of MIT and Harvard