|
Molecular sequence analysis |
Sergey Nurk |
28 Mar 2014, Fri, 17:00 |
|
String Graph Assembly For Diploid Genomes With Long Reads (PacBio) |
Dmitry Antipov |
21 Mar 2014, Fri, 16:00 |
|
RECOMB talk rehearsal |
Yana Safonova, Anton Bankevich |
14 Mar 2014, Fri, 16:00 |
|
HyDA: Efficient synergistic single-cell genome assembly |
Ira Vasilinec |
7 Mar 2014, Fri, 16:00 |
|
OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes |
Vlad Saveliev |
28 Feb 2014, Fri, 16:00 |
|
Assembly of million nucleotides long reads |
Andrey Prjibelski |
12 Feb 2014, Wed, 20:00 |
|
Mugsy: fast multiple alignment of closely related whole genomes |
Alexey Gurevich |
7 Feb 2014, Fri, 15:00 |
|
Readjoiner: a fast and memory efficient string graph-based sequence assembler |
Sergey Nurk |
30 Jan 2014, Thu, 14:00 |
|
Understanding of antibody repertoires from sequencing data |
Yana Safonova |
19 Dec 2013, Thu, 14:00 |
|
Ragout - a tool for assisted assembly using multiple references |
Mikhail Kolmogorov |
5 Dec 2013, Thu, 14:00 |
|
PERGA: A Paired-End Read Guided De Novo Assembler for Extending Contigs Using SVM Approach |
Alexey Gurevich |
15 Nov 2013, Fri, 16:00 |
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Partial order alignment |
Dmitry Antipov |
1 Nov 2013, Fri, 14:00 |
|
Smart pointers |
Alexey Gurevich |
31 Oct 2013, Thu, 14:00 |
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HapCompass: a fast cycle basis algorithm for accurate haplotype assembly of sequence data |
Yana Safonova |
24 Oct 2013, Thu, 14:00 |
|
Exact pattern matching with feed-forward bloom filters |
Sergey Nurk |
17 Oct 2013, Thu, 14:00 |
|
SPA: a short peptide assembler for metagenomic data |
Andrey Prjibelski |
11 Oct 2013, Fri, 14:00 |
|
"SRmapper: a fast and sensitive genome-hashing alignment tool" and "A Reference-Free Algorithm for Computational Normalization of Shotgun Sequencing Data" |
Ira Vasilinec |
3 Oct 2013, Thu, 14:00 |
|
antiSMASH 2.0—a versatile platform for genome mining of secondary metabolite producers |
Anton Bankevich |
27 Sep 2013, Fri, 15:00 |
|
The MaSuRCA genome assembler |
Alexey Gurevich |
20 Sep 2013, Fri, 15:00 |
|
Uncovering the roles of rare variants in common disease through whole-genome sequencing |
Ksenia Krasheninnikova |
16 May 2013, Thu, 16:00 |
|
Identifying and Classifying Trait Linked Polymorphisms in Non-Reference Species by Walking Coloured de Bruijn Graphs |
Vlad Saveliev |
25 Apr 2013, Thu, 16:00 |
|
Reference-assisted chromosome assembly |
Dmitry Antipov |
4 Apr 2013, Thu, 12:30 |
|
Next generation sequencing for TCR repertoire profiling: platform—specific features and correction algorithms |
Yana Safonova |
21 Mar 2013, Thu, 12:30 |
|
Using cascading Bloom filters to improve the memory usage for de Brujin graphs |
Alexey Gurevich |
14 Mar 2013, Thu, 12:30 |
|
Ray, Telescoper, and PE assembler. |
Andrey Prjibelski |
21 Feb 2013, Thu, 13:00 |
|
CGAL: computing genome assembly likelihoods |
Alexander Sirotkin |
14 Feb 2013, Thu, 13:00 |
|
ALLPATHS-LG |
Dmitry Antipov |
7 Feb 2013, Thu, 13:00 |
|
Metagenomics |
ABLab and ITMO |
24 Jan 2013, Thu, 13:00 |
|
De novo co-assembly of bacterial genomes from multiple single cells |
Sergey Nurk |
17 Jan 2013, Thu, 13:00 |
|
Genovo: De Novo Assembly for Metagenomes |
Alexander Sirotkin |
13 Dec 2012, Thu, 12:30 |
|
EULER-AIR and GraphLab |
Sergey Nikolenko |
22 Nov 2012, Thu, 12:30 |
|
Novel applications of nanobodies for in vivo bio-imaging of inflamed tissues in inflammatory diseases and cancer |
Kira Vyatkina |
8 Nov 2012, Thu, 14:00 |
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Meta-IDBA and Meta-Velvet, assemblers for metagenome datasets |
Dmitry Antipov |
25 Oct 2012, Thu, 14:00 |
|
Stem cells and bioinformatics challenges |
Prof. Kiselev S.L., Moscow, The Vavilov Institute of General Genetics (VIGG) |
12 Oct 2012, Fri, 14:00 |
|
Stem cells and bioinformatics challenges |
Prof. Kiselev S.L. Moscow, The Vavilov Institute of General Genetics (VIGG) |
12 Oct 2012, Fri, 14:00 |
|
A proteomics approach for the identification and cloning of monoclonal antibodies from serum |
Nikolay Vyahhi |
4 Oct 2012, Thu, 12:30 |
|
High-throughput sequencing of the zebrafish antibody repertoire. |
Mikhail Dvorkin |
14 Sep 2012, Fri, 11:30 |
|
The cactus graph |
Ilya Minkin |
5 Sep 2012, Wed, 16:00 |
|
Determinism and stochasticity during maturation of the zebrafish antibody repertoire. |
Kira Vyatkina |
16 Aug 2012, Thu, 11:30 |
|
Hybrid Error Correction and De Novo Assembly of Single-Molecule Sequencing Reads |
Sergey Nurk |
2 Aug 2012, Thu, 11:30 |
|
Hapsembler |
Yana Safonova |
27 Jul 2012, Fri, 11:30 |
|
DEGAS: De Novo Discovery of Dysregulated Pathways in Human Disease (Ulitsky, Shamir et al) |
Anton Bankevich |
24 Jul 2012, Tue, 11:30 |
|
Combinatorial algorithms for structural variation detection in high-throughput sequenced genomes |
Sergey Nikolenko |
19 Jul 2012, Thu, 11:30 |
|
Simultaneous Structural Variation Discovery in Multiple Paired-End Sequenced Genomes |
Dmitry Antipov |
17 Jul 2012, Tue, 11:30 |
|
organelles; central dogma special cases. |
N. Volodina |
12 Jul 2012, Thu, 12:00 |
|
GASV Software |
Alexander Sirotkin |
6 Jul 2012, Fri, 11:30 |
|
Assembly of polymorphic genomes: Algorithms and application to Ciona savignyi |
Alexey Gurevich |
5 Jul 2012, Thu, 11:30 |
|
Chromosomal Basis of Heredity, Meiosis and Gametogenesis |
Natalia Volodina |
3 Jul 2012, Tue, 12:00 |
|
Space-efficient and exact de Bruijn graph representation based on a Bloom filter |
Alexey Pyshkin |
28 Jun 2012, Thu, 11:30 |
|
Reconstructing cancer genomes from paired-end sequencing data |
Sergey Nurk |
22 Jun 2012, Fri, 11:30 |
|
Full-length transcriptome assembly from RNA-Seq data without a reference genome |
Andrey Prjibelski |
21 Jun 2012, Thu, 11:30 |
|
Journal Club: Assisted assembly |
Nikolay Vyahhi |
12 Apr 2012, Thu, 14:00 |
|
Journal Club: A high-resolution map of human evolutionary constraint using 29 mammals |
Nikolay Vyahhi |
29 Mar 2012, Thu, 14:00 |
|
Genome Rearrangements Bootcamp |
Max Alekseev |
12 Dec 2011, Mon, 18:00 |
|
Proteomics BootCamp (LAB projects in Computational Proteomics) |
Kira Vyatkina |
2 Dec 2011, Fri, 11:00 |
|
Genome Rearrangement Bootcamp |
Max Alekseev |
1 Dec 2011, Thu, 18:00 |
|
Peptide Sequence TagsPeptide Sequence Tags: Generation and Applications |
Kira Vyatkina |
25 Nov 2011, Fri, 11:00 |
|
Opera and MIP scaffolders |
Alexander Kulikov |
15 Nov 2011, Tue, 12:00 |
|
Metagenomic discovery of biomass-degrading genes and genomes from cow rumen (Science, 2011 Jan). |
Nikolay Vyahhi |
15 Nov 2011, Tue, 11:00 |
|
Gapped Spectral Dictionaries (Jeong et al., 2011) |
Max Gladkih |
11 Nov 2011, Fri, 13:36 |
|
Genome Rearrangement - Introduction |
Max Alekseyev |
9 Nov 2011, Wed, 16:00 |
|
Path-set: novel approach to repeat resolving |
Dmitry Antipov |
3 Nov 2011, Thu, 13:00 |
|
Structural variation in two human genomes using de novo assembly |
Mikhail Dvorkin |
30 Sep 2011, Fri, 11:00 |
|
Protein identificaion be spectral network analysis |
Nuno Bandeira |
14 Sep 2011, Wed, 12:00 |
|
A ranking-based scoring function for peptide-spectrum matches, part 2 |
Sergey Nurk |
9 Sep 2011, Fri, 11:00 |
|
A ranking-based scoring function for peptide-spectrum matches, part 1 |
Sergey Nurk |
6 Sep 2011, Tue, 11:00 |
|
Aligners + visualizers |
Nikolay Vyahhi |
31 Aug 2011, Wed, 12:30 |
|
Talk by Son |
Son Pham |
26 Aug 2011, Fri, 17:45 |
|
Journal Club |
Alexander Kulikov |
26 Aug 2011, Fri, 11:00 |
|
Tech talk - git, tmux |
Valery Lesin, Mikhail Dvorkin |
25 Aug 2011, Thu, 12:13 |
|
С++ talking |
Valery Lesin |
3 Aug 2011, Wed, 10:30 |
|
--- |
Natalia Golenetskaya (Bordeaux, INRIA) |
27 Jul 2011, Wed, 13:00 |
|
De Novo peptide sequencing (Dancik et al., 1999 and Frank, 2009) |
Sergey Nikolenko |
27 Jul 2011, Wed, 10:30 |
|
Peptide spectrum matching |
Alexey Nezhvinsky (U. of Michigan, formerly from school #239) |
26 Jul 2011, Tue, 10:30 |
|
С++ talking |
Valery Lesin |
13 Jul 2011, Wed, 13:00 |
|
Blocked Pattern Matching: Open problems |
Kira Vyatkina |
11 Jul 2011, Mon, 10:30 |
|
Target-Decoy Search in MS: When things may go wrong |
Kira Vyatkina |
7 Jul 2011, Thu, 10:30 |
|
Spectral probabilities and spectral dictionaries |
Pavel Pevzner |
6 Jul 2011, Wed, 10:30 |
|
Intro to computational MS |
Pavel Pevzner |
5 Jul 2011, Tue, 11:00 |
|
New possibilities of high-resolution mass-spectrometry at top-down and bottom up proteomics |
Evgeniy Nikolaev |
4 Jul 2011, Mon, 15:00 |
|
Seaweeds |
Sergey Nikolenko |
23 Jun 2011, Thu, 14:00 |
|
C++ talking |
Valery Lesin |
7 Jun 2011, Tue, 12:00 |
|
Methods for finding frequent items in data stream |
Kristina Kurian |
31 May 2011, Tue, 12:00 |
|
MS and Blocked Pattern Matching |
Pavel Pevzner |
28 Apr 2011, Thu, 10:30 |
|
Repeat classification |
Sergey Nikolenko |
27 Apr 2011, Wed, 10:30 |
|
Error correction |
Sergey Nikolenko |
25 Apr 2011, Mon, 16:00 |
|
Paired de Bruijn |
Alexander Sirotkin, Dmitry Antipov |
25 Apr 2011, Mon, 14:00 |
|
De Bruijn project |
Anton Bankevich, Sergey Nurk |
22 Apr 2011, Fri, 17:00 |
|
A Bruijn project |
Mikhail Dvorkin |
21 Apr 2011, Thu, 11:30 |
|
Rectangle Graph |
Nikolay Vyahhi |
19 Apr 2011, Tue, 14:00 |
|
Minimizers etc. |
Alexander Kulikov |
14 Apr 2011, Thu, 10:30 |
|
Proteomics |
Pavel Pevzner |
13 Apr 2011, Wed, 10:30 |
|
Context-free Genome Assembly |
Max Alekseev |
12 Apr 2011, Tue, 10:30 |
|
SOPRA assembler |
Sergey Nurk |
11 Feb 2011, Fri, 17:00 |
|
IDBA assembler |
Alexander Sirotkin |
11 Feb 2011, Fri, 15:00 |
|
Max's talk |
Max Alekseev |
10 Feb 2011, Thu, 19:00 |
|
Filling Scaffolds with Gene Repetitions: Maximizing the Number of Adjacencies |
Nikolay Vyahhi |
10 Feb 2011, Thu, 18:00 |
|
Succinct Indexable Dictionaries with Applications to Encoding k-ary Trees, Prefix Sums and Multisets |
Dmitry Antipov |
10 Feb 2011, Thu, 15:15 |
|
Ray assembler |
Alexander Sirotkin |
9 Feb 2011, Wed, 15:00 |
|
Limitations of next-generation genome sequence assembly |
Mikhail Dvorkin |
8 Feb 2011, Tue, 18:00 |
|
Single cell genome sequencing |
Sergey Nurk |
7 Feb 2011, Mon, 18:00 |
|
Error correction of high-throughput sequencing datasets with non-uniform coverage |
Sergey Nikolenko |
7 Feb 2011, Mon, 15:00 |
|
DRIMM-Synteny: decomposing genomes into evolutionary conserved segments |
Mikhail Dvorkin |
5 Feb 2011, Sat, 14:30 |
|
Efficient construction of an assembly string graph using the FM-index |
Anton Bankevich |
5 Feb 2011, Sat, 13:00 |
|
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome |
Sergey Nurk |
5 Feb 2011, Sat, 12:00 |
|
De novo assembly of human genomes with massively parallel short read sequencing. (SOAPdenovo) |
Alexander Kulikov |
4 Feb 2011, Fri, 17:00 |
|
Hidden Markov Models, Randomized Algorithms |
Sergey Nikolenko |
3 Feb 2011, Thu, 20:00 |
|
Quake: quality-aware detection and correction of sequencing errors |
Anton Bankevich |
3 Feb 2011, Thu, 18:00 |
|
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome |
Sergey Nurk |
3 Feb 2011, Thu, 15:00 |
|
Clustering |
Sergey Nikolenko |
2 Feb 2011, Wed, 20:00 |
|
ABySS: A parallel assembler for short read sequence data |
Alexander Sirotkin |
2 Feb 2011, Wed, 18:00 |
|
Succinct Data Structures for Assembling Large Genomes |
Nikolay Vyahhi |
2 Feb 2011, Wed, 15:30 |
|
Molecular evolution |
Dmitry Antipov |
1 Feb 2011, Tue, 20:00 |
|
De novo fragment assembly with short mate-paired reads: Does the read length matter? |
Alexander Kulikov |
1 Feb 2011, Tue, 18:00 |
|
ALLPATHS 2: small genomes assembled accurately and with high continuity from short paired reads |
Mikhail Dvorkin |
1 Feb 2011, Tue, 15:00 |
|
Efficient construction of an assembly string graph using the FM-index |
Anton Bankevich |
31 Jan 2011, Mon, 15:00 |
|
Opportunistic Data Structures with Applications |
Mikhail Dvorkin |
29 Jan 2011, Sat, 18:30 |
|
Suffix arrays: A new method for on-line string searches |
Alexander Kulikov |
29 Jan 2011, Sat, 17:00 |
|
De novo assembly of short sequence reads |
Alexander Sirotkin |
29 Jan 2011, Sat, 15:30 |
|
Assembly of large genomes using second-generation sequencing |
Sergey Nurk |
29 Jan 2011, Sat, 14:00 |
|
Paired de Bruijn graphs: a novel approach for incorporating mate pair information into genome assemblers |
Sergey Nikolenko |
28 Jan 2011, Fri, 16:30 |
|
Suffix arrays: A new method for on-line string searches |
Alexander Kulikov |
28 Jan 2011, Fri, 14:00 |
|
Combinatorial Pattern Matching |
Nikolay Vyahhi |
27 Jan 2011, Thu, 20:00 |
|
ALLPATHS: de novo assembly of whole-genome shotgun microreads |
Alexander Sirotkin |
27 Jan 2011, Thu, 18:00 |
|
Velvet |
Anton Bankevich |
27 Jan 2011, Thu, 17:30 |
|
A space-efficient construction of the Burrows-Wheeler transform for genomic data |
Sergey Nikolenko |
27 Jan 2011, Thu, 15:00 |
|
Mass Spectrometry and Proteomics |
Mikhail Dvorkin |
26 Jan 2011, Wed, 20:00 |
|
Velvet: algorithms for de novo short read assembly using de Bruijn graphs |
Anton Bankevich |
26 Jan 2011, Wed, 18:00 |
|
Short read fragment assembly of bacterial genomes |
Nikolay Vyahhi |
26 Jan 2011, Wed, 15:30 |
|
RNA secondary structure prediction, Statistical methods for gene prediction, Similarity-based methods for gene prediction |
Alexander Sirotkin |
25 Jan 2011, Tue, 20:00 |
|
Opportunistic Data Structures with Applications |
Mikhail Dvorkin |
25 Jan 2011, Tue, 16:30 |
|
De novo repeat classification and fragment assembly |
Anton Bankevich |
22 Jan 2011, Sat, 19:30 |
|
Fragment assembly with short reads |
Dmitry Antipov |
22 Jan 2011, Sat, 18:00 |
|
An Eulerian path approach to DNA fragment assembly |
Nikolay Vyahhi |
22 Jan 2011, Sat, 16:30 |
|
Fragment assembly with double-barreled data |
Sergey Nikolenko |
22 Jan 2011, Sat, 15:00 |
|
Graphs and DNA Sequencing |
Alexander Kulikov |
20 Jan 2011, Thu, 20:00 |
|
De novo repeat classification and fragment assembly |
Anton Bankevich |
20 Jan 2011, Thu, 18:00 |
|
Fragment assembly with short reads |
Alexander Sirotkin |
20 Jan 2011, Thu, 15:00 |
|
Linear Space Alignment, Multiple Alignment |
Sergey Nurk |
19 Jan 2011, Wed, 20:00 |
|
An Eulerian path approach to DNA fragment assembly |
Nikolay Vyahhi |
19 Jan 2011, Wed, 18:00 |
|
Fragment assembly with double-barreled data |
Sergey Nikolenko |
19 Jan 2011, Wed, 15:00 |
|
Dynamic Programming: Edit Distance, Alignment |
Anton Bankevich |
18 Jan 2011, Tue, 20:00 |
|
Genome Rearrangements |
Dmitry Antipov |
15 Jan 2011, Sat, 19:00 |
|
Brute Force: DNA Mapping, Motif Searching |
Sergey Nikolenko |
15 Jan 2011, Sat, 16:30 |
|
Molecular Biology Primer |
Nikolay Vyahhi |
15 Jan 2011, Sat, 15:00 |
|
Molecular Biology Primer |
Nikolay Vyahhi |
13 Jan 2011, Thu, 20:00 |
|
Molecular Biology Primer |
Nikolay Vyahhi |
12 Jan 2011, Wed, 20:00 |
